library(reshape2)
library(plotly)
library(dplyr)

busco3_real

csv=read.csv("busco3_real.csv", header=TRUE)

All BUSCO (all sets)

Complete

## Complete genes comparison
## [1] "One (or more) set is not normally distributed"
## [1] "Data not significant. Skipping pairwise comparison"

Single

## Single genes comparison
## [1] "One (or more) set is not normally distributed"
## [1] "Kruskal-Wallis test was significant (p<.05)"
## [1] "P value"
## [1] 5.665218e-10
## [1] "Pairwise wilcox test"
##
##  Pairwise comparisons using Wilcoxon rank sum test with continuity correction
##
## data:  sing$Score and sing$Program
##
##         Transpi
## Trinity 5.8e-10
##
## P value adjustment method: BH

Duplicated

## Duplicated genes comparison
## [1] "One (or more) set is not normally distributed"
## [1] "Kruskal-Wallis test was significant (p<.05)"
## [1] "P value"
## [1] 9.602908e-11
## [1] "Pairwise wilcox test"
##
##  Pairwise comparisons using Wilcoxon rank sum test with continuity correction
##
## data:  dup$Score and dup$Program
##
##         Transpi
## Trinity 9.8e-11
##
## P value adjustment method: BH

Fragmented

## Fragmented genes comparison
## [1] "One (or more) set is not normally distributed"
## [1] "Data not significant. Skipping pairwise comparison"

Missing

## Missing genes comparison
## [1] "One (or more) set is not normally distributed"
## [1] "Data not significant. Skipping pairwise comparison"



All BUSCO (by reads)

Only TransPi

TEST STATS

Complete

## Complete genes comparison

Singe-Copy

## Singe-Copy genes comparison

Duplicated

## Duplicated genes comparison

Fragmented

## Fragmented genes comparison

Missing

## Missing genes comparison



By species (all sets)




BUSCO and reads