library(reshape2)
library(plotly)
library(dplyr)
csv=read.csv("busco3_real.csv", header=TRUE)
Complete
## Complete genes comparison
## [1] "One (or more) set is not normally distributed"
## [1] "Data not significant. Skipping pairwise comparison"
Single
## Single genes comparison
## [1] "One (or more) set is not normally distributed"
## [1] "Kruskal-Wallis test was significant (p<.05)"
## [1] "P value"
## [1] 5.665218e-10
## [1] "Pairwise wilcox test"
##
## Pairwise comparisons using Wilcoxon rank sum test with continuity correction
##
## data: sing$Score and sing$Program
##
## Transpi
## Trinity 5.8e-10
##
## P value adjustment method: BH
Duplicated
## Duplicated genes comparison
## [1] "One (or more) set is not normally distributed"
## [1] "Kruskal-Wallis test was significant (p<.05)"
## [1] "P value"
## [1] 9.602908e-11
## [1] "Pairwise wilcox test"
##
## Pairwise comparisons using Wilcoxon rank sum test with continuity correction
##
## data: dup$Score and dup$Program
##
## Transpi
## Trinity 9.8e-11
##
## P value adjustment method: BH
Fragmented
## Fragmented genes comparison
## [1] "One (or more) set is not normally distributed"
## [1] "Data not significant. Skipping pairwise comparison"
Missing
## Missing genes comparison
## [1] "One (or more) set is not normally distributed"
## [1] "Data not significant. Skipping pairwise comparison"
Only TransPi
TEST STATS
Complete
## Complete genes comparison
Singe-Copy
## Singe-Copy genes comparison
Duplicated
## Duplicated genes comparison
Fragmented
## Fragmented genes comparison
Missing
## Missing genes comparison
BUSCO and reads